麻豆传媒

Lupo teaches middle school, elementary, TESOL, and special education literacy courses for pre-service and in-service teachers and future reading specialists. 
Dr. Sarah M. Lupo is an assistant professor in the . Dr. Lupo received her bachelor’s degree from James Madison University and a master's and doctorate in literacy education from the University of Virginia. Dr. Lupo has over two decades of experience as an English teacher, ESL teacher, reading specialist, and literacy coach. She has taught at the elementary, middle, and high school levels in Washington D.C., Istanbul, Turkey, Phoenix, AZ, and Charlottesville, VA.
Dr. Lupo was named a Reading Hall of Fame Emerging Scholars Fellow and AERA Divison C New Faculty Fellow. She is a recipient of the Major Parker Fellowship Endowment of the College of Education, winner of the Jeanne Chall Fellowship from the International Literacy Association (ILA), and a finalist for ILA’s dissertation of the year competition.  in Reading Research Quarterly, Reading Teacher, Journal of Adult and Adolescent Literacy (JAAL), Literacy Research: Theory, Methods, and Practice, Literacy Today, and Reading in Virginia. She is also the lead author of .
Her research focuses on exploring various influences to readers’ comprehension, including text complexity and knowledge, and how instruction can be differentiated to support all readers’ understanding of challenging texts across the content areas. She also explores the science of reading, as she strives to put theory into practice to find practical ways teachers can improve literacy for K-12 students.
Lupo earned a bachelor's degree in Philosophy at JMU, a master's degree and Ph.D. in literacy education at the University of Virginia.

Marina Weiler, Ph.D., serves as an Assistant Professor in the Department of Psychiatry and Neurobehavioral Sciences at the University of Virginia School of Medicine. She holds a Ph.D. degree from the University of Campinas (UNICAMP) in Brazil, with her doctoral research focused on fMRI biomarkers in Alzheimer's disease. Her Ph.D. thesis was distinguished with the Best Brazilian PhD Thesis award in the field of Medicine I in 2016, and her contributions were recognized by the Brazilian Academy of Neurology on three separate occasions. In 2016, Marina joined the National Institute on Aging, National Institutes of Health (NIA/NIH), where she conducted research on the potential of brain stimulation as a therapeutic approach for addressing age-related cognitive decline. During her time at NIA, she was honored with the 2020 NIA Women in Science Excellence in Research Award. Subsequently, at the University of California, Los Angeles (UCLA), she conducted research focused on biomarkers associated with disorders of consciousness following traumatic brain injuries, utilizing fMRI as a key tool. At the University of Virginia, Marina's research interests have evolved to encompass topics such as out-of-body experiences, altered states of consciousness, mediumship, and remote viewing. Her project on out-of-body experiences received recognition and support from the Templeton World Charity Foundation. Additionally, she was a runner-up award recipient in the Bigelow Institute for Consciousness Research (BICS) essay contest in 2021.

 is an associate professor of pediatrics at the . Dr. Wilkinson’s research focuses on examining and developing interventions to improve young people's access to reproductive health services.
As a general pediatrics fellow at Boston Medical Center/Boston University, she obtained her Master’s in Public Health and began conducting research on availability and access to over-the-counter emergency contraception for adolescents. Her research was cited in the federal court case that ultimately removed age restrictions for emergency contraception nationally.
Dr. Wilkinson graduated from Vanderbilt University School of Medicine in 2006 and completed her pediatric residency at Brown University/Hasbro Children's Hospital in Providence, Rhode Island. After residency, she pursued additional training through the general pediatrics fellowship at Boston Medical Center/Boston University. After fellowship, she was faculty at Children's Hospital of Los Angeles/University of Southern California, where she was a primary care pediatrician for three years. In 2015, she accepted a position at IU School of Medicine to return to a research career. 

Nash's background is in archaeology and her scholarly interests and research topics include the archaeology of the Appalachians, Native American cultures, applications of technology in the field sciences, historical ecology and public participation in science.
She is consulting archaeologist and principal investigator for Shenandoah National Park and a registered professional archaeologist. She has 40 years of experience in cultural resource management.
Recent work includes the study of the impacts of climate change on heritage resources of the Chesapeake Bay region. Combining geospatial, archaeological and citizen science research, Nash and her students are developing methodologies for assessment and prediction of these impacts.
She received her doctorate in anthropology/archaeology from the Catholic University of America, a master's degree in applied philosophy from Bowling Green State University, and a bachelor of science degree in anthropology and philosophy from James Madison University.

Rob Alexander is an associate professor of public policy and administration in the political science department, where he teaches courses in sustainability policy and public management and leadership. 
His teaching and research interests reflect his multidisciplinary training. He enjoys teaching courses on collaborative public management, environmental and natural resource policy, environmental conflict management, organizational theory, and research design and implementation. His research examines the challenges and opportunities facing public, private, nonprofit and citizen organizations as they interact to address problems in the sustainability arena. 
Dr. Alexander also serves as the co-director of the , an academic institute that provides training, produces scholarship and engages in direct service for public agencies and non-profit organizations on the topic of facilitating dialogue and deliberation. 
Grounded in environmental science and experienced in public and nonprofit management, Dr. Alexander holds a bachelor's degree in geology from Duke University, dual master's degrees in public administration and environmental science from Indiana University-Bloomington, and a doctorate in public administration from the Maxwell School at Syracuse University. He spent 15 years as an environmental educator and nonprofit executive before obtaining his doctorate. He formerly was a visiting assistant professor at Rochester Institute of Technology in Rochester, New York.

Vaziri teaches undergraduate courses in business analytics, business statistics, and management science, and graduate MBA courses in decision making and data analytics.
Vaziri’s research focuses on business analytics, ranking methods with applications to sports, and academic motivation in higher education.
Vaziri earned a bachelor's degree in Industrial and Operations Engineering at the University of Michigan-Ann Arbor and a doctorate in Industrial Engineering at Purdue University.

Using an interprofessional team approach to research, Akers and his team study different nutrition interventions and exercise modalities to help individuals prevent and treat chronic diseases and to improve their health-related quality of life. Akers’s team also examines various nutrition manipulations to improve athletic performance.
Akers is passionate about teaching undergraduate and graduate students about the research process.
Akers earned his doctorate in nutrition in chronic disease at Virginia Tech, his master's in nutritional and physical activity at JMU and his bachelor's in clinical dietetics at Radford.

Altaii teaches classes in Energy Issues, Thermodynamics, Fluid Mechanics, and Heat Transfer.
Altaii research focuses on energy and environmental sustainability, energy monitoring and conservation, and extracting water out of air.
Altaii earned a bachelor's degree in Mechanical Engineering at University of Baghdad, a master's degree in Mechanical Engineering at City College of the City University of New York and a doctorate in Mechanical Engineering at The City University of New York.

Baxter teaches courses on international and national security, nuclear weapons and proliferation, data analytics and open-source intelligence.
Baxter’s research focuses on nuclear weapons, geopolitics and risk, data analytics and innovative methodologies in assessing emerging threats, in particular at the nexus of technology and security.
Baxter earned a bachelor's degree in political science and history at Grove City College, a master's degree in public policy at George Mason University and a doctorate in international affairs, science, and technology with a technical minor in nuclear engineering at Georgia Institute of Technology.
His research has appeared in International Areas Studies Review, Journal of Cybersecurity, Review of Policy Research, Science and Diplomacy, Federation of American Scientists’ Public Interest Reports, Arms Control Wonk, and Real Clear Defense. He is the co-editor and contributor to the Routledge published, Nuclear Modernization in the 21st Century, which examines the extent to which nuclear weapons modernization has become a significant point of concern and consideration in international security.  He is a member of International Studies Association, American Political Science Association, and the International Network for Social Network Analysis, as well as an advisory board member of the Rowman & Littlefield book series on weapons of mass destruction.

Bentley is a geographer who has teaching and research interests in weather-societal interactions and critical physical geography. This interdisciplinary research examines issues surrounding human-land-atmosphere interactions and works to untangle their complex, critical relationships.

Given the breadth of subjects found under the umbrella of geography, Bentley enjoys teaching a wide range of courses from climate change to understanding human cognition and environmental perception through film.

Bentley has plenty of media experience, having been a forecast meteorologist at The Weather Channel in Atlanta.
Bentley has a doctorate in geography from the University of Georgia, a master's degree in geography from the University of Nebraska-Lincoln, and bachelors degrees in geography and mathematics from Northern Kentucky University.

One line of research primarily examines the interplay of various social identities across various critically important contexts, including education and politics. This work largely employs a feminist psychology perspective, drawing upon theories of intersectionality and identity dimensionality. 
Another line of research examines the interplay of the self, the other and social context for marginalized individuals in majority-group dominated educational and occupational fields, such as science, technology, engineering and mathematics (STEM). Specifically, Blankenship is interested in how gendered stereotypes of minority groups (women & sexual minorities) interact with contexts that are stereotypically masculine. 
Blankenship earned his doctorate in psychology, personality and social contexts at The University of Michigan; his master's degree in psychological science at The University of Michigan and his bachelor's degree in psychology at Arizona State University.

Santo Coleman’s areas of research are men’s health and masculinity across the lifespan, including adolescent health and fatherhood. Currently, his focus is the effect of gender on health behavior outcomes such as obesity. Additionally, he examines the role of culture on gender performance and academic outcomes. 
Coleman received his doctorate in public health with a focus on social and behavioral health science at University of Connecticut, his master’s in public health with a focus on public health policy and management from the Mel and Enid Zuckerman School of Public Health at University of Arizona and his bachelor’s degrees in political science and Spanish from Georgia State University.

Danzell teaches courses in international/domestic terrorism, US national security, intelligence ethics, anti-money laundering, research design and writing for intelligence analysis, and intelligence theory.
His research focuses on international/domestic terrorism, military interventions, African conflict, intelligence theory & application, and a range of conflict processes. He uses quantitative and qualitative methods to develop and test new theoretical insights on these themes. 
Danzell earned a bachelor's degree in political science and history at Cameron University, a master's degree in political science at Kansas State University and a doctorate in security studies at Kansas State University. 

Dr. William Kew is a chemist with the Biomolecular Pathways team. He works on high-resolution mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy analysis of complex mixtures. Kew joined PNNL and EMSL in 2019 as a postdoctoral research associate and transitioned to staff in summer 2020. He graduated in 2018 from the University of Edinburgh with a PhD in chemistry, studying Scotch whisky as a complex mixture by high-resolution MS and NMR techniques.  
Kew’s research includes instrument and method development on the FTICR and Orbitrap mass spectrometry platforms, method development and validation in NMR, data analysis and visualization, and software development. His current projects include the development of the next generation 21 Tesla FTICR mass spectrometer and several other key technology development projects covering complex mixtures, stable isotopes, and imaging mass spectrometry.

Research Interests



Mass Spectrometry 


NMR Spectroscopy  


Complex Mixtures 


Metabolomics 


Instrument Development 




Software Development 



Education



PhD in Chemistry, The University of Edinburgh, 2018 


MS in Chemistry, University of Saint Andrews, 2014 



Publications

2020 
Kew W.R., and J. Hawkes. 2020. "High resolution mass spectrometry strategies for the investigation of dissolved organic matter." In鈥疢ultidimensional Analytical Techniques in Environmental Research, edited by Regina Duarte, Armando Duarte. PNNL-SA-146397. 
Hawkes J., J. D'Andrilli, J.N. Agar, M. Barrow, S. Berg, N. Catalan, and H. Chen, et al. 2020. "An international laboratory comparison of dissolved organic matter composition by high resolution mass spectrometry: Are we getting the same answer?"鈥疞imnology and Oceanography Methods鈥�18, no. 6:235-258. PNNL-SA-147033.鈥� 
2019 
Afonso C., M. Barrow, A.N. Davies, M. Delsuc, T. Ebbels, F.A. Fernandez-Lima, and C. Gauchotte-Lindsay, et al. 2019. "Data mining and visualisation: general discussion."鈥疐araday Discussions鈥�218. PNNL-SA-147037.鈥� 
Afonso C., M. Barrow, N.A. Bell, A.N. Davies, D. Duca, C. Focsa, and C. Gauchotte-Lindsay, et al. 2019. "Dealing with complexity: general discussion."鈥疐araday Discussions鈥�218. PNNL-SA-147036.鈥�

Kelly Stratton is an accomplished biostatistician with more than 10 years of experience in applying statistical methods to biological and environmental questions. She currently works in the Earth and Biological Sciences Directorate and leads the Data Transformations Integrated Research Platform at EMSL. 
Kelly's expertise lies in analysis of , , and  measurements obtained through liquid chromatography or  mass spectrometry (MS), , and Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS), as well as RNA-Seq data. She has collaborated on numerous projects, both internally and externally funded, to design experiments, perform statistical analyses, and develop visualizations for biomarker studies, as well as to enhance understanding of host response to infection. In addition, Kelly has served as a statistical lead, contributor, and advisor on various projects, where she has developed analysis pipelines for biological data that are deployed in cloud computing infrastructures. She is a key developer of . 
Apart from these technical areas, Kelly has also served as the project manager for the Pacific Northwest National Laboratory (PNNL) based testing and evaluation team for the Intelligence Advanced Research Projects Activity FELIX program, which aimed to support the advancement of biodetection and biosurveillance capabilities. She was also the principal investigator on a related project, where she worked with DNA sequence data (e.g., Nanopore, Illumina, PacBio). In recent years, Kelly has been collaborating with EMSL users to provide statistical analyses and data visualization solutions. Throughout her time at PNNL, Kelly has mentored many interns, from high school students to postdocs. She also teaches an intern-focused R programming series, demonstrating her commitment to developing the next generation of statisticians. 

Education


MS Biostatistics, University of Washington, 2012 
BS Mathematics, Washington State University, 2008 
BA Spanish, Washington State University, 2008 


Awards and Recognition


PNNL Laboratory Director’s Pathway to Excellence Award, 2022
DOE Secretary Honors Award, 2021
PNNL Outstanding Performance Award, 2020
PNNL Outstanding Performance Award, 2018


Affiliations and Professional Service


American Statistical Association
American Society for Mass Spectrometry, member since 2023


Publications

2023 
Bramer, L.M., et al., Multi-omics of NET formation and correlations with CNDP1, PSPB, and L-cystine levels in severe and mild COVID-19 infections. Heliyon, 2023. 9(3). DOI:鈥� 
Couvillion, S.P., et al., Rapid remodeling of the soil lipidome in response to a drying-rewetting event. Microbiome, 2023. 11(1): p. 1-20. DOI:   
Degnan, D.J., et al., pmartR 2.0: A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes. Journal of Proteome Research, 2023. DOI:鈥� 
2022 
Bramer, L., et al., Multi-omics Characterization of Neutrophil Extracellular Trap Formation in Severe and Mild COVID-19 Infections (preprint). 2022. DOI:鈥� 
Eloe-Fadrosh, E.A., et al., The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource. Nucleic Acids Research, 2022. 50(D1): p. D828-D836. DOI:  
Kyle, J.E., et al., Simulated night-shift schedule disrupts the plasma lipidome and reveals early markers of cardiovascular disease risk. Nature and Science of Sleep, 2022. 14: p. 981. DOI:鈥� 
2021 
Feng, S., et al., Hypergraph models of biological networks to identify genes critical to pathogenic viral response. BMC bioinformatics, 2021. 22(1): p. 1-21. DOI:鈥� 
Kyle, J.E., et al., A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases. Scientific data, 2021. 8(1): p. 114. 
Myatt, L., et al., Placental Proteomics Reveals Sexually Dimorphic Adaptive Changes to Maternal Obesity and Gestational Diabetes. Placenta, 2021. 112: p. e10. DOI: 
Thompson, A.M., et al., Fourier transform ion cyclotron resonance mass spectrometry (FT鈥怚CR鈥怣S) peak intensity normalization for complex mixture analyses. Rapid Communications in Mass Spectrometry, 2021. 35(9): p. e9068. 
Wang, L.-B., et al., Proteogenomic and metabolomic characterization of human glioblastoma. Cancer cell, 2021. 39(4): p. 509-528. e20. DOI:鈥� 
2020 
Bramer, L.M., et al., ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data. PLoS computational biology, 2020. 16(3): p. e1007654. DOI:  
Leier, H.C., et al., A global lipid map defines a network essential for Zika virus replication. Nature communications, 2020. 11(1): p. 3652. 
Odenkirk, M.T., et al., From prevention to disease perturbations: a multi-omic assessment of exercise and myocardial infarctions. Biomolecules, 2020. 11(1): p. 40. DOI:鈥� 
Odenkirk, M.T., et al., Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools. Molecular omics, 2020. 16(6): p. 521-532. DOI:鈥� 
Piehowski, P.D., et al., Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution. Nature communications, 2020. 11(1): p. 8. DOI:  
2019 
Bramer, L.M., et al., P-Mart: interactive analysis of ion abundance global proteomics data. Journal of proteome research, 2019. 18(3): p. 1426-1432. 
Clair, G., et al., Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data. Bioinformatics, 2019. 35(21): p. 4507-4508. 
Kim, Y.-M., et al., Light-stress influences the composition of the murine gut microbiome, memory function, and plasma metabolome. Frontiers in Molecular Biosciences, 2019. 6: p. 108. 
Mitchell, H.D., et al., The role of EGFR in influenza pathogenicity: multiple network-based approaches to identify a key regulator of non-lethal infections. Frontiers in cell and developmental biology, 2019. 7: p. 200. 
Myatt, L., et al., Changes in Placental Lipidomics with Obesity and Gestational Diabetes: Sexual Dimorphism. Placenta, 2019. 83: p. e44-e45. DOI:  
Stratton, K.G., et al., pmartR: quality control and statistics for mass spectrometry-based biological data. Journal of proteome research, 2019. 18(3): p. 1418-1425. 
Webb-Robertson, B.-J.M., et al., Statistically driven metabolite and lipid profiling of patients from the undiagnosed diseases network. Analytical chemistry, 2019. 92(2): p. 1796-1803. 
2018 
Kedia, K., et al., Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis. Tuberculosis, 2018. 112: p. 52-61. DOI:鈥� 
Menachery, V.D., et al., MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape. Proceedings of the National Academy of Sciences, 2018. 115(5): p. E1012-E1021. DOI:鈥� 
Oláhová, M., et al., Biallelic mutations in ATP5F1D, which encodes a subunit of ATP synthase, cause a metabolic disorder. The American Journal of Human Genetics, 2018. 102(3): p. 494-504. DOI:鈥� 
2017 
Burnum-Johnson, K.E., et al., MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling. Analyst, 2017. 142(3): p. 442-448. DOI:鈥� 
Davie-Martin, C.L., et al., Implications of bioremediation of polycyclic aromatic hydrocarbon-contaminated soils for human health and cancer risk. Environmental science & technology, 2017. 51(17): p. 9458-9468. 
Eisfeld, A.J., et al., Multi-platform’omics analysis of human Ebola virus disease pathogenesis. Cell host & microbe, 2017. 22(6): p. 817-829. e8. DOI:鈥� 
Kyle, J.E., et al., Comparing identified and statistically significant lipids and polar metabolites in 15鈥恲ear old serum and dried blood spot samples for longitudinal studies. Rapid communications in mass spectrometry, 2017. 31(5): p. 447-456. 
Menachery, V., et al., Middle East Respiratory syndrome coronavirus nonstructural protein 16 is necessary for interferon resistance and viral pathogenesis. mSphere. 2017; 2 (6): e00346-17. DOI.  
Menachery, V.D., et al., MERS-CoV accessory ORFs play key role for infection and pathogenesis. MBio, 2017. 8(4): p. e00665-17. DOI:鈥� 
Webb-Robertson, B.-J.M., et al., P-MartCancer–Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets. Cancer research, 2017. 77(21): p. e47-e50. DOI:  
2015 
Noonan, C.F. and K.G. Stratton. Improving scientific communication and publication output in a multidisciplinary laboratory: Changing culture through staff development workshops. in 2015 IEEE International Professional Communication Conference (IPCC). 2015. IEEE. 
2014 
Detterbeck, F.C., et al., The IASLC/ITMIG Thymic Epithelial Tumors Staging Project: proposal for an evidence-based stage classification system for the forthcoming (8th) edition of the TNM classification of malignant tumors. Journal of Thoracic Oncology, 2014. 9(9): p. S65-S72. DOI:鈥� 
Kondo, K., et al., The IASLC/ITMIG Thymic Epithelial Tumors Staging Project: proposals for the N and M components for the forthcoming (8th) edition of the TNM classification of malignant tumors. Journal of Thoracic Oncology, 2014. 9(9): p. S81-S87. DOI:  
Nicholson, A.G., et al., The IASLC/ITMIG Thymic Epithelial Tumors Staging Project: proposals for the T Component for the forthcoming (8th) edition of the TNM classification of malignant tumors. Journal of Thoracic Oncology, 2014. 9(9): p. S73-S80. DOI:鈥� 
Usmani, S., et al., Phase II study of pomalidomide in high-risk relapsed and refractory multiple myeloma. Leukemia, 2014. 28(12): p. 2413-2415. DOI:鈥� 
2013 
Detterbeck, F.C., et al., The IASLC/ITMIG thymic malignancies staging project: development of a stage classification for thymic malignancies. Journal of Thoracic Oncology, 2013. 8(12): p. 1467-1473. DOI:鈥� 
Usmani, S.Z., et al., Final results of phase II study of pomalidomide (Pom) in GEP-defined high risk relapsed and refractory multiple myeloma (RRMM). Blood, 2013. 122(21): p. 3191. DOI:  
2010 
Beagley, N., K.G. Stratton, and B.-J.M. Webb-Robertson, VIBE 2.0: visual integration for bayesian evaluation. Bioinformatics, 2010. 26(2): p. 280-282.

Dr. John Cliff is an analytical chemist with the . He leads the  capability for biology and biogeochemistry. When not helping EMSL users with their research, he is busy developing techniques that help us understand nutrient fluxes at small spatial scales in terrestrial ecosystems, guard against nuclear proliferation and other weapons of mass destruction, and learn about the factors controlling greenhouse gas emissions.

Research Interests


Microbial and nuclear forensics and biogeochemistry
Developing capabilities to analyze and understand our world at micron length scales
Collaborating with researchers studying early life on our planet
Understanding sulfur metabolizing microorganisms from the Archean Eon to today


Education


PhD in Soil Science, minor in Environmental Engineering, Oregon State University, 2001
MS in Environmental Microbiology, West Virginia University, 1996
BS in Biology with honors, minor in Chemistry, Shepherd University, 1989


Awards and Recognition


Technical leader for the first International Atomic Energy Network Laboratory to be housed in a university
Outstanding Achievement Award, Subgroup on Safeguards Technical Support and International Safeguards Project Office (2008)
Outstanding Achievement Award. National Security Division, United States Department of Energy (2005)


Publications

2020
Boiteau, R. M., R. Kukkadapu, J. B. Cliff, C. R. Smallwood, L. Kovarik, M. G. Wirth, M. H. Engelhard, T. Varga, A. Dohnalkova, D. E. Perea, T. Wietsma, J. J. Moran, and K. S. Hofmockel. 2020. “Calcareous Organic Matter Coatings Sequester Siderophores in Alkaline Soils.” Science of the Total Environment 724. .
Bone, S. E., J. Cliff, K. Weaver, C. J. Takacs, S. Roycroft, S. Fendorf, and J. R. Bargar. 2020. “Complexation by Organic Matter Controls Uranium Mobility in Anoxic Sediments.” Environmental Science and Technology 54 (3): 1493-1502. .
Reilly, D. D., C. L. Beck, E. C. Buck, J. B. Cliff, A. M. Duffin, T. G. Lach, M. Liezers, K. W. Springer, S. J. Tedrow, and M. M. Zimmer. 2020. “Focused Ion Beam for Improved Spatially-Resolved Mass Spectrometry and Analysis of Radioactive Materials for Uranium Isotopic Analysis.” Talanta 211. .
2019
Brislawn, C. J., E. B. Graham, K. Dana, P. Ihardt, S. J. Fansler, W. B. Chrisler, J. B. Cliff, J. C. Stegen, J. J. Moran, and H. C. Bernstein. 2019. “Forfeiting the Priority Effect: Turnover Defines Biofilm Community Succession.” ISME Journal 13 (7): 1865-1877. .
Gregory, D., I. Mukherjee, S. L. Olson, R. R. Large, L. V. Danyushevsky, A. S. Stepanov, J. N. Avila, J. Cliff, T. R. Ireland, R. Raiswell, P. H. Olin, V. V. Maslennikov, and T. W. Lyons. 2019. “The Formation Mechanisms of Sedimentary Pyrite Nodules Determined by Trace Element and Sulfur Isotope Microanalysis.” Geochimica et Cosmochimica Acta 259: 53-68. .
Mulcahy, J. R., S. He, D. S. Jin, W. Guo, S. Arteta, J. B. Cliff, Z. Zhu, and W. D. Wei. 2019. “Experimental Insights into the Growth of Single Truncated Anatase Bipyramids.” Chemistry - A European Journal 25 (4): 993-996. .
Taylor, S. D., L. Kovarik, J. B. Cliff, and K. M. Rosso. 2019. “Facet-Selective Adsorption of Fe(II) on Hematite Visualized by Nanoscale Secondary Ion Mass Spectrometry.” Environmental Science: Nano 6 (8): 2429-2440. .
Vasdekis, A. E., H. Alanazi, A. M. Silverman, C. J. Williams, A. J. Canul, J. B. Cliff, A. C. Dohnalkova, and G. Stephanopoulos. 2019. “Eliciting the Impacts of Cellular Noise on Metabolic Trade-Offs by Quantitative Mass Imaging.” Nature Communications 10 (1). .
2018
China, S., S. M. Burrows, B. Wang, T. H. Harder, J. Weis, M. Tanarhte, L. V. Rizzo, J. Brito, G. G. Cirino, P. L. Ma, J. Cliff, P. Artaxo, M. K. Gilles, and A. Laskin. 2018. “Fungal Spores as a Source of Sodium Salt Particles in the Amazon Basin.” Nature Communications 9 (1). .
Doubleday, Z. A., J. Cliff, C. Izzo, and B. M. Gillanders. 2018. “Untapping the Potential of Sulfur Isotope Analysis in Biominerals.” Marine Ecology Progress Series 598: 159-166. .
LeTourneau, M. K., M. J. Marshall, J. B. Cliff, R. F. Bonsall, A. C. Dohnalkova, D. V. Mavrodi, S. I. Devi, O. V. Mavrodi, J. B. Harsh, D. M. Weller, and L. S. Thomashow. 2018. “Phenazine-1-Carboxylic Acid and Soil Moisture Influence Biofilm Development and Turnover of Rhizobacterial Biomass on Wheat Root Surfaces.” Environmental Microbiology 20 (6): 2178-2194. .
Nuñez, J., R. Renslow, J. B. Cliff, and C. R. Anderton. 2018. “NanoSIMS for Biological Applications: Current Practices and Analyses.” Biointerphases 13 (3). .
Proetto, M. T., C. E. Callmann, J. Cliff, C. J. Szymanski, D. Hu, S. B. Howell, J. E. Evans, G. Orr, and N. C. Gianneschi. 2018. “Tumor Retention of Enzyme-Responsive Pt(II) Drug-Loaded Nanoparticles Imaged by Nanoscale Secondary Ion Mass Spectrometry and Fluorescence Microscopy.” ACS Central Science 4 (11): 1477-1484. .
2017
Bone, S. E., J. J. Dynes, J. Cliff, and J. R. Bargar. 2017. “Uranium(Iv) Adsorption by Natural Organic Matter in Anoxic Sediments.” Proceedings of the National Academy of Sciences of the United States of America 114 (4): 711-716. .
Fehrenbacher, J. S., A. D. Russell, C. V. Davis, A. C. Gagnon, H. J. Spero, J. B. Cliff, Z. Zhu, and P. Martin. 2017. “Link between Light-Triggered Mg-Banding and Chamber Formation in the Planktic Foraminifera Neogloboquadrina dutertrei.” Nature Communications 8. .
Holmes, A. J., Y. V. Chew, F. Colakoglu, J. B. Cliff, E. Klaassens, M. N. Read, S. M. Solon-Biet, A. C. McMahon, V. C. Cogger, K. Ruohonen, D. Raubenheimer, D. G. Le Couteur, and S. J. Simpson. 2017. “Diet-Microbiome Interactions in Health Are Controlled by Intestinal Nitrogen Source Constraints.” Cell Metabolism 25 (1): 140-151. .
Johnson, S. P., F. J. Korhonen, C. L. Kirkland, J. B. Cliff, E. A. Belousova, and S. Sheppard. 2017. “An Isotopic Perspective on Growth and Differentiation of Proterozoic Orogenic Crust: From Subduction Magmatism to Cratonization.” Lithos 268-271: 76-86. .
McGrail, B. P., H. T. Schaef, F. A. Spane, J. B. Cliff, O. Qafoku, J. A. Horner, C. J. Thompson, A. T. Owen, and C. E. Sullivan. 2017. “Field Validation of Supercritical CO2 Reactivity with Basalts.” Environmental Science and Technology Letters 4 (1): 6-10. .
Roelofs, B., M. Barham, J. Cliff, M. Joachimski, L. Martin, and K. Trinajstic. 2017. “Assessing the Fidelity of Marine Vertebrate Microfossil δ18O Signatures and Their Potential for Palaeo-Ecological and -Climatic Reconstructions.” Palaeogeography, Palaeoclimatology, Palaeoecology 465: 79-92. .
Spetsius, Z. V., J. Cliff, W. L. Griffin, and S. Y. O'Reilly. 2017. “Carbon Isotopes of Eclogite-Hosted Diamonds from the Nyurbinskaya Kimberlite Pipe, Yakutia: The Metasomatic Origin of Diamonds.” Chemical Geology 455: 131-147. .
2016
Fougerouse, D., S. Micklethwaite, A. Halfpenny, S. M. Reddy, J. B. Cliff, L. A. J. Martin, M. Kilburn, P. Guagliardo, and S. Ulrich. 2016. “The Golden Ark: Arsenopyrite Crystal Plasticity and the Retention of Gold through High Strain and Metamorphism.” Terra Nova 28 (3): 181-187. .
2015
Kaiser, C., M. R. Kilburn, P. L. Clode, L. Fuchslueger, M. Koranda, J. B. Cliff, Z. M. Solaiman, and D. V. Murphy. 2015. “Exploring the Transfer of Recent Plant Photosynthates to Soil Microbes: Mycorrhizal Pathway vs Direct Root Exudation.” New Phytologist 205 (4): 1537-1551. .
Ribeiro, Y., R. C. Figueiredo e Silva, L. M. Lobato, L. C. Lima, F. J. Rios, S. G. Hagemann, and J. Cliff. 2015. “Fluid Inclusion and Sulfur and Oxygen Isotope Studies on Quartz-Carbonate-Sulfide Veins of the Carvoaria Velha Deposit, Córrego Do Sítio Gold Lineament, Quadrilátero Ferrífero, Minas Gerais, Brazil.” Ore Geology Reviews 67: 11-33. .
Smithies, R. H., C. L. Kirkland, J. B. Cliff, H. M. Howard, and R. Quentin de Gromard. 2015. “Syn-Volcanic Cannibalisation of Juvenile Felsic Crust: Superimposed Giant 18O-Depleted Rhyolite Systems in the Hot and Thinned Crust of Mesoproterozoic Central Australia.” Earth and Planetary Science Letters 424: 15-25. .
Van Kranendonk, M. J., C. L. Kirkland, and J. Cliff. 2015. “Oxygen Isotopes in Pilbara Craton Zircons Support a Global Increase in Crustal Recycling at 3.2ga.” Lithos 228-229: 90-98. .
Wacey, D., M. R. Kilburn, M. Saunders, J. B. Cliff, C. Kong, A. G. Liu, J. J. Matthews, and M. D. Brasier. 2015. “Uncovering Framboidal Pyrite Biogenicity Using Nano-Scale CNorg Mapping.” Geology 43 (1): 27-30. .
Wacey, D., N. Noffke, J. Cliff, M. E. Barley, and J. Farquhar. 2015. “Micro-Scale Quadruple Sulfur Isotope Analysis of Pyrite from the ~3480ma Dresser Formation: New Insights into Sulfur Cycling on the Early Earth.” Precambrian Research 258: 24-35. .
Yang, J., F. Meng, X. Xu, P. T. Robinson, Y. Dilek, A. B. Makeyev, R. Wirth, M. Wiedenbeck, and J. Cliff. 2015. “Diamonds, Native Elements and Metal Alloys from Chromitites of the Ray-Iz Ophiolite of the Polar Urals.” Gondwana Research 27 (2): 459-485. .
2014
Bougoure, J., M. Ludwig, M. Brundrett, J. Cliff, P. Clode, M. Kilburn, and P. Grierson. 2014. “High-Resolution Secondary Ion Mass Spectrometry Analysis of Carbon Dynamics in Mycorrhizas Formed by an Obligately Myco-Heterotrophic Orchid.” Plant, Cell and Environment 37 (5): 1223-1230. .
Chew, Y. V., A. J. Holmes, and J. B. Cliff. 2014. “Visualization of Metabolic Properties of Bacterial Cells Using Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS).” Methods in Molecular Biology 1096: 133-146.  10.1007/978-1-62703-712-9_11
Evans, K. A., A. G. Tomkins, J. Cliff, and M. L. Fiorentini. 2014. “Insights into Subduction Zone Sulfur Recycling from Isotopic Analysis of Eclogite-Hosted Sulfides.” Chemical Geology 365: 1-19. .
Fu, B., J. Cliff, and R. E. Zartman. 2014. “Zircon Oxygen Isotopic Constraints from Plutonic Rocks on the Magmatic and Crustal Evolution of the Northern Appalachians in Southern New England, USA.” Canadian Journal of Earth Sciences 51 (5): 485-499. .
Giacometti, F., K. A. Evans, G. Rebay, J. Cliff, A. G. Tomkins, P. Rossetti, G. Vaggelli, and D. T. Adams. 2014. “Sulfur Isotope Evolution in Sulfide Ores from Western Alps: Assessing the Influence of Subduction-Related Metamorphism.” Geochemistry, Geophysics, Geosystems 15 (10): 3808-3829. .
Ingham, E. S., N. J. Cook, J. Cliff, C. L. Ciobanu, and A. Huddleston. 2014. “A Combined Chemical, Isotopic and Microstructural Study of Pyrite from Roll-Front Uranium Deposits, Lake Eyre Basin, South Australia.” Geochimica et Cosmochimica Acta 125: 440-465. .
Martyniuk, M., D. Baldwin, R. Jeffery, K. K. M. B. D. Silva, R. C. Woodward, J. Cliff, R. N. Krishnan, J. M. Dell, and L. Faraone. 2014. “Characterization of Mechanical, Optical and Structural Properties of Bismuth Oxide Thin Films as a Write-Once Medium for Blue Laser Recording.” Journal of British Studies 1633 (3). .
Wacey, D., M. Saunders, J. Cliff, M. R. Kilburn, C. Kong, M. E. Barley, and M. D. Brasier. 2014. “Geochemistry and Nano-Structure of a Putative ~3240 Million-Year-Old Black Smoker Biota, Sulphur Springs Group, Western Australia.” Precambrian Research 249: 1-12. .
Zhelezinskaia, I., A. J. Kaufman, J. Farquhar, and J. Cliff. 2014. “Large Sulfur Isotope Fractionations Associated with Neoarchean Microbial Sulfate Reduction.” Science 346 (6210): 742-744. .
2013
Ceh, J., M. R. Kilburn, J. B. Cliff, J. B. Raina, M. Van Keulen, and D. G. Bourne. 2013. “Nutrient Cycling in Early Coral Life Stages: Pocillopora damicornis Larvae Provide Their Algal Symbiont (Symbiodinium) with Nitrogen Acquired from Bacterial Associates.” Ecology and Evolution 3 (8): 2393-2400. .
Farquhar, J., J. Cliff, A. L. Zerkle, A. Kamyshny, S. W. Poulton, M. Claire, D. Adams, and B. Harms. 2013. “Pathways for Neoarchean Pyrite Formation Constrained by Mass-Independent Sulfur Isotopes.” Proceedings of the National Academy of Sciences of the United States of America 110 (44): 17638-17643. .
Fu, B., N. T. Kita, S. A. Wilde, X. Liu, J. Cliff, and A. Greig. 2013. “Origin of the Tongbai-Dabie-Sulu Neoproterozoic Low-δ 18O Igneous Province, East-Central China.” Contributions to Mineralogy and Petrology 165 (4): 641-662. .
Huang, J. X., W. L. Griffin, Y. Gréau, N. J. Pearson, S. Y. O'Reilly, J. Cliff, and L. Martin. 2013. “Unmasking Xenolithic Eclogites: Progressive Metasomatism of a Key Roberts Victor Sample.” Chemical Geology 364: 56-65. .
Kirkland, C. L., S. P. Johnson, R. H. Smithies, J. A. Hollis, M. T. D. Wingate, I. M. Tyler, A. H. Hickman, J. B. Cliff, S. Tessalina, E. A. Belousova, and R. C. Murphy. 2013. “Not-So-Suspect Terrane: Constraints on the Crustal Evolution of the Rudall Province.” Precambrian Research 235: 131-149. .
Kirkland, C. L., R. H. Smithies, A. J. Woodhouse, H. M. Howard, M. T. D. Wingate, E. A. Belousova, J. B. Cliff, R. C. Murphy, and C. V. Spaggiari. 2013. “Constraints and Deception in the Isotopic Record; the Crustal Evolution of the West Musgrave Province, Central Australia.” Gondwana Research 23 (2): 759-781. .
Lu, Y. J., R. Kerrich, A. I. S. Kemp, T. C. McCuaig, Z. Q. Hou, C. J. R. Hart, Z. X. Li, P. A. Cawood, L. Bagas, Z. M. Yang, J. Cliff, E. A. Belousova, F. Jourdan, and N. J. Evans. 2013. “Intracontinental Eocene-Oligocene Porphyry Cu Mineral Systems of Yunnan, Western Yangtze Craton, China: Compositional Characteristics, Sources, and Implications for Continental Collision Metallogeny.” Economic Geology 108 (7): 1541-1576. .
Lu, Y. J., R. Kerrich, T. C. McCuaig, Z. X. Li, C. J. R. Hart, P. A. Cawood, Z. Q. Hou, L. Bagas, J. Cliff, E. A. Belousova, and S. H. Tang. 2013. “Geochemical, Sr-Nd-Pb, and Zircon Hf-O Isotopic Compositions of Eocene-Oligocene Shoshonitic and Potassic Adakite-Like Felsic Intrusions in Western Yunnan, SW China: Petrogenesis and Tectonic Implications.” Journal of Petrology 54 (7): 1309-1348. .
Peres, P., P. M. L. Hedberg, S. Walton, N. Montgomery, J. B. Cliff, F. Rabemananjara, and M. Schuhmacher. 2013. “Nuclear Safeguards Applications Using LG-SIMS with Automated Screening Capabilities.” Surface and Interface Analysis 45 (1): 561-565. .
Pidgeon, R. T., A. A. Nemchin, and J. Cliff. 2013. “Interaction of Weathering Solutions with Oxygen and U-Pb Isotopic Systems of Radiation-Damaged Zircon from an Archean Granite, Darling Range Batholith, Western Australia.” Contributions to Mineralogy and Petrology 166 (2): 511-523. .
Raimondo, T., C. Clark, M. Hand, J. Cliff, and R. Anczkiewicz. 2013. “A Simple Mechanism for Mid-Crustal Shear Zones to Record Surface-Derived Fluid Signatures.” Geology 41 (6): 711-714. .
Wacey, D., N. McLoughlin, M. R. Kilburn, M. Saunders, J. B. Cliff, C. Kong, M. E. Barley, and M. D. Brasier. 2013. “Nanoscale Analysis of Pyritized Microfossils Reveals Differential Heterotrophic Consumption in the 虄1.9-Ga Gunflint Chert.” Proceedings of the National Academy of Sciences of the United States of America 110 (20): 8020-8024. .
2012
Fu, B., B. Paul, J. Cliff, M. Bröcker, and F. Bulle. 2012. “O-Hf Isotope Constraints on the Origin of Zircon in High-Pressure Mélange Blocks and Associated Matrix Rocks from Tinos and Syros, Greece.” European Journal of Mineralogy 24 (2): 277-287. .
Raimondo, T., C. Clark, M. Hand, J. Cliff, and C. Harris. 2012. “High-Resolution Geochemical Record of Fluid-Rock Interaction in a Mid-Crustal Shear Zone: A Comparative Study of Major Element and Oxygen Isotope Transport in Garnet.” Journal of Metamorphic Geology 30 (3): 255-280. .
2011
Hedberg, P. M. L., P. Peres, J. B. Cliff, F. Rabemananjara, S. Littmann, H. Thiele, C. Vincent, and N. Albert. 2011. “Improved Particle Location and Isotopic Screening Measurements of Sub-Micron Sized Particles by Secondary Ion Mass Spectrometry.” Journal of Analytical Atomic Spectrometry 26 (2): 406-413. .
Wacey, D., M. R. Kilburn, M. Saunders, J. Cliff, and M. D. Brasier. 2011. “Microfossils of Sulphur-Metabolizing Cells in 3.4-Billion-Year-Old Rocks of Western Australia.” Nature Geoscience 4 (10): 698-702. .
Wedlock, L. E., M. R. Kilburn, J. B. Cliff, L. Filgueira, M. Saunders, and S. J. Berners-Price. 2011. “Visualising Gold inside Tumour Cells Following Treatment with an Antitumour Gold(I) Complex.” Metallomics 3 (9): 917-925. .
2010
Kilburn, M. R., D. L. Jones, P. L. Clode, J. B. Cliff, E. A. Stockdale, A. M. Herrmann, and D. V. Murphy. 2010. “Application of Nanoscale Secondary Ion Mass Spectrometry to Plant Cell Research.” Plant Signaling and Behavior 5 (6): 760-762. .
Williams, D. E., M. R. Kilburn, J. Cliff, and G. I. N. Waterhouse. 2010. “Composition Changes around Sulphide Inclusions in Stainless Steels, and Implications for the Initiation of Pitting Corrosion.” Corrosion Science 52 (11): 3702-3716. .
2009
Clode, P. L., M. R. Kilburn, D. L. Jones, E. A. Stockdale, J. B. Cliff, A. M. Herrmann, and D. V. Murphy. 2009. “In Situ Mapping of Nutrient Uptake in the Rhizosphere Using Nanoscale Secondary Ion Mass Spectrometry.” Plant Physiology 151 (4): 1751-1757. .
2008
Donohue, D., A. Ciurapinski, J. Cliff Iii, F. Rüdenauer, T. Kuno, and J. Poths. 2008. “Microscopic Studies of Spherical Particles for Nuclear Safeguards.” Applied Surface Science 255 (5 PART 2): 2561-2568. .
Jarman, K. H., H. W. Kreuzer-Martin, D. S. Wunschel, N. B. Valentine, J. B. Cliff, C. E. Petersen, H. A. Colburn, and K. L. Wahl. 2008. “Bayesian-Integrated Microbial Forensics.” Applied and Environmental Microbiology 74 (11): 3573-3582. .
2007
Bliss, M., D. C. Gerlach, J. B. Cliff, M. B. Toloczko, D. S. Barnett, G. Ciampi, K. A. Jones, and K. G. Lynn. 2007. “Pb Quantification of CdZnTe Microheterogeneities Complimented by SEM, IR microscopy, EDX, and TOF-SIMS.” Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 579 (1): 138-140. .
Cliff, J. B., P. J. Bottomley, D. J. Gaspar, and D. D. Myrold. 2007. “Nitrogen Mineralization and Assimilation at Millimeter Scales.” Soil Biology and Biochemistry 39 (3): 823-826. .
2006
Gerlach, D. C., J. B. Cliff, D. E. Hurley, B. D. Reid, W. W. Little, G. H. Meriwether, A. J. Wickham, and T. A. Simmons. 2006. “Secondary Ionization Mass Spectrometric Analysis of Impurity Element Isotope Ratios in Nuclear Reactor Materials.” Applied Surface Science 252 (19): 7041-7044. .
2005
Cliff, J. B., K. H. Jarman, N. B. Valentine, S. L. Golledge, D. J. Gaspar, D. S. Wunschel, and K. L. Wahl. 2005. “Differentiation of Spores of Bacillus subtilis Grown in Different Media by Elemental Characterization Using Time-of-Flight Secondary Ion Mass Spectrometry.” Applied and environmental microbiology 71 (11): 6524-6530. .
2004
飧�. 2004. “Peak Fitting to Resolve CN- Isotope Ratios in Biological and Environmental Samples Using TOF-SIMS.” Applied Surface Science 231-232: 912-916. .
2003
飧�. 2003. “Erratum: Modeling the Effects of Diffusion Limitations on Nitrogen-15 Isotope Dilution Experiments with Soil Aggregates (Soil Science Society of America Journal (2002) 66 (1868-1877).” Soil Science Society of America Journal 67 (2): 677. .
2002
Cliff, J. B., P. J. Bottomley, R. Haggerty, and D. D. Myrold. 2002. “Modeling the Effects of Diffusion Limitations on Nitrogen-15 Isotope Dilution Experiments with Soil Aggregates.” Soil Science Society of America Journal 66 (6): 1868-1877. .
Cliff, J. B., D. J. Gaspar, P. J. Bottomley, and D. D. Myrold. 2002. “Exploration of Inorganic C and N Assimilation by Soil Soil Microbes with Time-of-Flight Secondary Ion Mass Spectrometry.” Applied and environmental microbiology 68 (8): 4067-4073. .

Yuri Corilo is a computational scientist with the Systems Modeling and Computational Science team. He is a mass spectrometrist with more than a decade of experience in all aspects of the field. His research focuses on developing novel methodologies for data processing, annotation, modeling, and software development for complex mixtures analysis applied to metabolomics and natural organic matter molecular characterization.
Corilo has created the following software products:

CoremMS: Mass Spectrometry Sofware Framework: 
MetaMS: Software for GC-MS based metabolomics analysis: 
EnviroMS: Software for FT-MS based organic matter analysis: 


Research Interests


Computational approaches to Complex Mixture Analysis
Small Molecules Analysis, Metabolomics, and Natural Organic Matter
Software Development and Data Analysis for Mass Spectrometry


Education


PhD in Science, State University of Campinas, 2011
MS in Organic Chemistry, State University of Maringa, 2009
BS in Chemistry, State University of Maringa, 2005


Awards and Recognition

Innovator Award, Principal Investigator PetroOrg Software, The Florida State University, 2013

Affiliations and Professional Service


American Chemical Society
American Society for Mass Spectrometry


Patents

Corilo, Yuri. PetroOrg Software. The Florida State University, FL, USA. Copyright TXu001897498

Publications

2020
Wood-Charlson, E. M., Anubhav, D. Auberry, H. Blanco, M. I. Borkum, Y. E. Corilo, K. W. Davenport, S. Deshpande, R. Devarakonda, M. Drake, W. D. Duncan, M. C. Flynn, D. Hays, B. Hu, M. Huntemann, P. E. Li, M. Lipton, C. C. Lo, D. Millard, K. Miller, P. D. Piehowski, S. Purvine, T. B. K. Reddy, M. Shakya, J. C. Sundaramurthi, P. Vangay, Y. Wei, B. E. Wilson, S. Canon, P. S. G. Chain, K. Fagnan, S. Martin, L. A. McCue, C. J. Mungall, N. J. Mouncey, M. E. Maxon, and E. A. Eloe-Fadrosh. 2020. “The National Microbiome Data Collaborative: Enabling Microbiome Science.” Nature Reviews Microbiology 18 (6): 313-314. . 
 2019
Krajewski, L. C., W. K. Robbins, Y. E. Corilo, G. Bota, A. G. Marshall, and R. P. Rodgers. 2019. “Characterization of Ketones Formed in the Open System Corrosion Test of Naphthenic Acids by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 33 (6): 4946-4950. . 
Ajaero, C., K. M. Peru, S. A. Hughes, H. Chen, A. M. McKenna, Y. E. Corilo, D. W. McMartin, and J. V. Headley. 2019. “Atmospheric Pressure Photoionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Characterization of Oil Sand Process-Affected Water in Constructed Wetland Treatment.” Energy and Fuels 33 (5): 4420-4431. . 
2018
Jarvis, J. M., J. M. Billing, Y. E. Corilo, A. J. Schmidt, R. T. Hallen, and T. M. Schaub. 2018. “FT-ICR MS Analysis of Blended Pine-Microalgae Feedstock HTL Biocrudes.” Fuel 216: 341-348. . 
2017
Clingenpeel, A. C., S. M. Rowland, Y. E. Corilo, P. Zito, and R. P. Rodgers. 2017. “Fractionation of Interfacial Material Reveals a Continuum of Acidic Species That Contribute to Stable Emulsion Formation.” Energy and Fuels 31 (6): 5933-5939. . 
Avneri-Katz, S., R. B. Young, A. M. McKenna, H. Chen, Y. E. Corilo, T. Polubesova, T. Borch, and B. Chefetz. 2017. “Adsorptive Fractionation of Dissolved Organic Matter (DOM) by Mineral Soil: Macroscale Approach and Molecular Insight.” Organic Geochemistry 103: 113-124. . 
Ajaero, C., D. W. McMartin, K. M. Peru, J. Bailey, M. Haakensen, V. Friesen, R. Martz, S. A. Hughes, C. Brown, H. Chen, A. M. McKenna, Y. E. Corilo, and J. V. Headley. 2017. “Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Characterization of Athabasca Oil Sand Process-Affected Waters Incubated in the Presence of Wetland Plants.” Energy and Fuels 31 (2): 1731-1740. . 
2016
Liu, P., Y. E. Corilo, and A. G. Marshall. 2016. “Polar Lipid Composition of Biodiesel Algae Candidates Nannochloropsis oculata and Haematococcus pluvialis from Nano Liquid Chromatography Coupled with Negative Electrospray Ionization 14.5 T Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 30 (10): 8270-8276. . 
Farenc, M., Y. E. Corilo, P. M. Lalli, E. Riches, R. P. Rodgers, C. Afonso, and P. Giusti. 2016. “Comparison of Atmospheric Pressure Ionization for the Analysis of Heavy Petroleum Fractions with Ion Mobility-Mass Spectrometry.” Energy and Fuels 30 (11): 8896-8903. .  
Corilo, Y. E., S. M. Rowland, and R. P. Rodgers. 2016. “Calculation of the Total Sulfur Content in Crude Oils by Positive-Ion Atmospheric Pressure Photoionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 30 (5): 3962-3966. . 
Chen, H., A. Hou, Y. E. Corilo, Q. Lin, J. Lu, I. A. Mendelssohn, R. Zhang, R. P. Rodgers, and A. M. McKenna. 2016. “4 Years after the Deepwater Horizon Spill: Molecular Transformation of Macondo Well Oil in Louisiana Salt Marsh Sediments Revealed by FT-ICR Mass Spectrometry.” Environmental Science and Technology 50 (17): 9061-9069. . 
2015
Lalli, P. M., Y. E. Corilo, S. M. Rowland, A. G. Marshall, and R. P. Rodgers. 2015. “Isomeric Separation and Structural Characterization of Acids in Petroleum by Ion Mobility Mass Spectrometry.” Energy and Fuels 29 (6): 3626-3633. . 
Jarvis, J. M., W. K. Robbins, Y. E. Corilo, and R. P. Rodgers. 2015. “Novel Method to Isolate Interfacial Material.” Energy and Fuels 29 (11): 7058-7064. . 
Clingenpeel, A. C., W. K. Robbins, Y. E. Corilo, and R. P. Rodgers. 2015. “Effect of the Water Content on Silica Gel for the Isolation of Interfacial Material from Athabasca Bitumen.” Energy and Fuels 29 (11): 7150-7155. . 
2014
Smith, D. F., A. M. McKenna, Y. E. Corilo, R. P. Rodgers, A. G. Marshall, and R. M. A. Heeren. 2014. “Direct Analysis of Thin-Layer Chromatography Separations of Petroleum Samples by Laser Desorption Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Imaging.” Energy and Fuels 28 (10): 6284-6288. . 
Rowland, S. M., W. K. Robbins, Y. E. Corilo, A. G. Marshall, and R. P. Rodgers. 2014. “Solid-Phase Extraction Fractionation to Extend the Characterization of Naphthenic Acids in Crude Oil by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 28 (8): 5043-5048. . 
Putman, J. C., S. M. Rowland, Y. E. Corilo, and A. M. McKenna. 2014. “Chromatographic Enrichment and Subsequent Separation of Nickel and Vanadyl Porphyrins from Natural Seeps and Molecular Characterization by Positive Electrospray Ionization FT-ICR Mass Spectrometry.” Analytical Chemistry 86 (21): 10708-10715. . 
Jarvis, J. M., D. S. Page-Dumroese, N. M. Anderson, Y. Corilo, and R. P. Rodgers. 2014. “Characterization of Fast Pyrolysis Products Generated from Several Western USA Woody Species.” Energy and Fuels 28 (10): 6438-6446. . 
2013
Podgorski, D. C., Y. E. Corilo, L. Nyadong, V. V. Lobodin, B. J. Bythell, W. K. Robbins, A. M. McKenna, A. G. Marshall, and R. P. Rodgers. 2013. “Heavy Petroleum Composition. 5. Compositional and Structural Continuum of Petroleum Revealed.” Energy and Fuels 27 (3): 1268-1276. . 
Pereira, R. C. L., R. C. Simas, Y. E. Corilo, B. G. Vaz, C. F. Klitzke, E. M. Schmidt, M. A. Pudenzi, R. M. C. F. Silva, E. T. Moraes, W. L. Bastos, M. N. Eberlin, and H. D. L. Nascimento. 2013. “Precision in Petroleomics Via Ultrahigh Resolution Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 27 (12): 7208-7216. . 
Lalli, P. M., Y. E. Corilo, M. Fasciotti, M. F. Riccio, G. F. De Sa, R. J. Daroda, G. H. M. F. Souza, M. McCullagh, M. D. Bartberger, M. N. Eberlin, and I. D. G. Campuzano. 2013. “Baseline Resolution of Isomers by Traveling Wave Ion Mobility Mass Spectrometry: Investigating the Effects of Polarizable Drift Gases and Ionic Charge Distribution.” Journal of Mass Spectrometry 48 (9): 989-997. . 
Garcia, J. S., B. G. Vaz, Y. E. Corilo, C. F. Ramires, S. A. Saraiva, G. B. Sanvido, E. M. Schmidt, D. R. J. Maia, R. G. Cosso, J. J. Zacca, and M. N. Eberlin. 2013. “Whisky Analysis by Electrospray Ionization-Fourier Transform Mass Spectrometry.” Food Research International 51 (1): 98-106. . 
Fasciotti, M., P. M. Lalli, G. Heerdt, R. A. Steffen, Y. E. Corilo, G. F. de Sá, R. J. Daroda, F. A. M. Reis, N. H. Morgon, R. C. L. Pereira, M. N. Eberlin, and C. F. Klitzke. 2013. “Structure-Drift Time Relationships in Ion Mobility Mass Spectrometry.” International Journal for Ion Mobility Spectrometry 16 (2): 117-132. . 
Fasciotti, M., P. M. Lalli, C. F. Klitzke, Y. E. Corilo, M. A. Pudenzi, R. C. L. Pereira, W. Bastos, R. J. Daroda, and M. N. Eberlin. 2013. “Petroleomics by Traveling Wave Ion Mobility-Mass Spectrometry Using CO2 as a Drift Gas.” Energy and Fuels 27 (12): 7277-7286. . 
Corilo, Y. E., D. C. Podgorski, A. M. McKenna, K. L. Lemkau, C. M. Reddy, A. G. Marshall, and R. P. Rodgers. 2013. “Oil Spill Source Identification by Principal Component Analysis of Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectra.” Analytical Chemistry 85 (19): 9064-9069. . 
2012
Xian, F., Y. E. Corilo, C. L. Hendrickson, and A. G. Marshall. 2012. “Baseline Correction of Absorption-Mode Fourier Transform Ion Cyclotron Resonance Mass Spectra.” International Journal of Mass Spectrometry 325-327: 67-72. .
Klitzke, C. F., Y. E. Corilo, K. Siek, J. Binkley, J. Patrick, and M. N. Eberlin. 2012. “Petroleomics by Ultrahigh-Resolution Time-of-Flight Mass Spectrometry.” Energy and Fuels 26 (9): 5787-5794. . 
Haddad, R., T. Regiani, C. F. Klitzke, G. B. Sanvido, Y. E. Corilo, D. V. Augusti, V. M. D. Pasa, R. C. C. Pereira, W. Romão, B. G. Vaz, R. Augusti, and M. N. Eberlin. 2012. “Gasoline, Kerosene, and Diesel Fingerprinting Via Polar Markers.” Energy and Fuels 26 (6): 3542-3547. . 
Basher, M. M., Y. E. Corilo, R. Sparrapan, M. Benassi, R. Augusti, M. N. Eberlin, and J. M. Riveros. 2012. “Exploring the Intrinsic Polar [4 + 2+] Cycloaddition Reactivity of Gaseous Carbosulfonium and Carboxonium Ions.” Journal of Mass Spectrometry 47 (11): 1526-1535. . 
Ávila, B. M. F., B. G. Vaz, R. Pereira, A. O. Gomes, R. C. L. Pereira, Y. E. Corilo, R. C. Simas, H. D. L. Nascimento, M. N. Eberlin, and D. A. Azevedo. 2012. “Comprehensive Chemical Composition of Gas Oil Cuts Using Two-Dimensional Gas Chromatography with Time-of-Flight Mass Spectrometry and Electrospray Ionization Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.” Energy and Fuels 26 (8): 5069-5079. . 
2011
Vijayakrishnan, B., A. Issaree, Y. E. Corilo, C. R. Ferreira, M. N. Eberlin, and M. G. Peter. 2011. “MSn of the Six Isomers of (GlcN)2(GlcNAc)2 Aminoglucan Tetrasaccharides (Diacetylchitotetraoses): Rules of Fragmentation for the Sodiated Molecules and Application to Sequence Analysis of Hetero-Chitooligosaccharides.” Carbohydrate Polymers 84 (2): 713-726. . 
Simas, R. C., R. C. L. Pereira, C. F. Klitzke, Y. E. Corilo, B. G. Vaz, M. A. Pudenzi, E. M. Schmidt, H. D. L. Do Nascimento, E. T. De Morais, W. L. Bastos, and M. N. Eberlin. 2011. “Petroleomics: Rapid and Comprehensive Characterization of Crude Oil and Derivatives Via Ultra-High Resolution and Accuracy FT MS Mass Spectrometry.” Boletim de Geociencias da Petrobras 20 (1-2): 211-228. (no website; no DOI; Brazilian). 
Lalli, P. M., Y. E. Corilo, G. F. De Sa, R. J. Daroda, V. De Souza, G. H. M. F. Souza, I. Campuzano, G. Ebeling, J. Dupont, and M. N. Eberlin. 2011. “Intrinsic Mobility of Gaseous Cationic and Anionic Aggregates of Ionic Liquids.” ChemPhysChem 12 (8): 1444-1447. . 
Corilo, Y. E., F. M. Nachtigall, P. V. Abdelnur, G. Ebeling, J. Dupont, and M. N. Eberlin. 2011. “Charge-Tagged N-Heterocyclic Carbenes.” RSC Advances 1 (1): 73-78. . 
2010
Lalli, P. M., Y. E. Corilo, P. V. Abdelnur, M. N. Eberlin, and K. K. Laali. 2010. “Intrinsic Acidity and Electrophilicity of Gaseous Propargyl/Allenyl Carbocations.” Organic and Biomolecular Chemistry 8 (11): 2580-2585. . 
Sanvido, G. B., J. S. Garcia, Y. E. Corilo, B. G. Vaz, J. J. Zacca, R. G. Cosso, M. N. Eberlin, and M. G. Peter. 2010. “Fast Screening and Secure Confirmation of Milk Powder Adulteration with Maltodextrin Via Electrospray Ionization-Mass Spectrometry [ESI(+)-MS] and Selective Enzymatic Hydrolysis.” Journal of Agricultural and Food Chemistry 58 (17): 9407-9412. . 
Machado, M. W., C. S. Neto, J. Salgado, G. Zaffari, A. Barison, F. R. Campos, Y. E. de Corilo, M. N. Eberlin, and M. W. Biavatti. 2010. “Search for Alkaloids on Callus Culture of Passiflora alata.” Brazilian Archives of Biology and Technology 53 (4): 901-910. . 
Corilo, Y. E., B. G. Vaz, R. C. Simas, H. D. Lopes Nascimento, C. F. Klitzke, R. C. L. Pereira, W. L. Bastos, E. V. Santos Neto, R. P. Rodgers, and M. N. Eberlin. 2010. “Petroleomics by EASI(±) FT-ICR MS.” Analytical Chemistry 82 (10): 3990-3996. . 
Buskuhl, H., R. A. Freitas, F. D. Monache, A. Barison, F. R. Campos, Y. E. Corilo, M. N. Eberlin, and M. W. Biavatti. 2010. “Erratum: A New Polyacetylene from Vernonia scorpioides (Lam.) Pers. (Asteraceae) and Its in vitro Antitumoral Activity.” Journal of the Brazilian Chemical Society 21 (10): 2017.  
Buskuhl, H., F. L. De Oliveira, L. Z. Blind, R. A. De Freitas, A. Barison, F. R. Campos, Y. E. Corilo, M. N. Eberlin, G. F. Caramori, and M. W. Biavatti. 2010. “Sesquiterpene Lactones from Vernonia scorpioides and Their in vitro Cytotoxicity.” Phytochemistry 71 (13): 1539-1544. . 
2009
Wu, L., M. N. Eberlin, Y. E. Corilo, D. Q. Liu, and H. Yin. 2009. “Dimerization of Ionized 4-(Methyl Mercapto)-Phenol During ESI, APCI and APPI Mass Spectrometry.” Journal of Mass Spectrometry 44 (9): 1389-1394. . 
Romão, W., M. F. Franco, Y. E. Corilo, M. N. Eberlin, M. A. S. Spinacé, and M. A. De Paoli. 2009. “Poly (Ethylene Terephthalate) Thermo-Mechanical and Thermo-Oxidative Degradation Mechanisms.” Polymer Degradation and Stability 94 (10): 1849-1859. . 
Buskuhl, H., R. A. Freitas, F. D. Monache, A. Barison, F. R. Campos, Y. E. Corilo, M. N. Eberlin, and M. W. Biavatti. 2009. “A New Polyacetylene from Vernonia scorpioides (Lam.) Pers. (Asteraceae) and Its in vitro Antitumoral Activity.” Journal of the Brazilian Chemical Society 20 (7): 1327-1333. . 
Benassi, M., Y. E. Corilo, D. Uria, R. Augusti, and M. N. Eberlin. 2009. “Recognition and Resolution of Isomeric Alkyl Anilines by Mass Spectrometry.” Journal of the American Society for Mass Spectrometry 20 (2): 269-277. . 
Alborés, P., L. D. Slep, L. S. Eberlin, Y. E. Corilo, M. N. Eberlin, G. Benítez, M. E. Vela, R. C. Salvarezza, and L. M. Baraldo. 2009. “From Monomers to Geometry-Constrained Molecules: One Step Further toward Cyanide Bridged Wires.” Inorganic Chemistry 48 (23): 11226-11235. . 
2008
Nachtigall, F. M., Y. E. Corilo, C. C. Cassol, G. Ebeling, N. H. Morgon, J. Dupont, and M. N. Eberlin. 2008. “Multiply Charged (Di-)Radicals.” Angewandte Chemie - International Edition 47 (1): 151-154. . 
Corilo, Y. E., and M. N. Eberlin. 2008. “Recognizing Α-, Β- or Γ-Substitution in Pyridines by Mass Spectrometry.” Journal of Mass Spectrometry 43 (12): 1636-1640. .

Dr. Amir Ahkami is a biologist and the leader of the . Ahkami joined EMSL in 2015 to support the development of the plant science research program. He also holds the position of adjunct assistant professor at Washington State University in Pullman, WA. He is currently leading research projects as a principal investigator focusing on poplar (Populus spp.) and model grasses’ (Brachypodium鈥痑nd鈥疭etaria) responses to abiotic stresses, molecular physiology of root formation, and physiological phenotyping to narrow the genotype-to-phenotype knowledge gap for crop improvement. He employs state-of-the-art technologies, including single cell-type specific molecular profiling coupled with high-resolution cellular imaging to address plant biology research gaps on molecular and physiological mechanisms that control bioenergy crop productivity and fitness in relationship to microbial communities in the rhizosphere. He is also assisting EMSL collaborators and users in the development of creative new applications for plant sciences.鈥� 

Odeta Qafoku is chemist with the Biogeochemical Transformations team. Qafoku is an environmental soil scientist and geochemist with 20 years of research experience on a broad range of projects in the topics of soil science, geochemistry, geochemical and thermodynamic modeling, mineral synthesis, organic and contaminant interaction with soil minerals, CO2 sequestration, and mineral weathering. Her resent research interests are in studying organic mineral interactions using methods that extend from nano- to macroscale; studying iron mineral transformations induced by reductive reactions; studying mineral incipient weathering as function of biological inputs and environmental changes, and applying scanning electron microscopy to study reactivity and transformation at reaction boundaries.

Dr. Andrew Lipton is a chemist with the  team. Lipton has been associated with EMSL from its inception as a resource for solid-state nuclear magnetic resonance (NMR) users. He brings his more than 30 years of NMR experience to aid EMSL users in obtaining experimental NMR data of environmental samples, such as soils, plant cell walls, and organo-mineral interactions. He also specializes in solid-state NMR of quadrupolar nuclides, including strontium, calcium, magnesium, deuterium, boron, and copper. He is currently helping develop NMR methodologies for in situ study of borohydride chemistry for hydrogen storage and lignin degradation to facilitate bioenergy conversion, among others. PNNL’s high-field dynamic nuclear polarization NMR enables some of these projects and Lipton helps develop these experiments, as well.

Research Interests


Characterization of organo-mineral interactions
Determination of plant cell wall architecture
Utilization of NMR to monitor reaction chemistry in situ


Education


PhD in Chemistry, University of South Carolina, 1993
BS in Chemistry, Syracuse University, 1987


Awards and Recognition


Key Biochemistry Developments, Chemical and Engineering News (2001)
Outstanding Performance Award, PNNL (1999, 2001, 2013)

 

Publications

2020
Mow R.E., A.S. Lipton, S. Shulda, E. Gaulding, T. Gennett, and W.A. Braunecker. 2020. "Colloidal Three-Dimensional Covalent Organic Frameworks and Their Application as Porous Liquids." Journal of Materials Chemistry in press.
Gao Y., A.S. Lipton, Y. Wittmer, D.T. Murray, and J.C. Mortimer. 2020. "A Grass-specific Cellulose-xylan Interaction Dominates in Sorghum Secondary Cell Walls." Nature Comm in press.
Bayliss, R. D., B. Key, G. Sai Gautam, P. Canepa, B. J. Kwon, S. H. Lapidus, F. Dogan, A. A. Adil, A. S. Lipton, P. J. Baker, G. Ceder, J. T. Vaughey, and J. Cabana. 2020. “Probing Mg Migration in Spinel Oxides.” Chemistry of Materials 32 (2): 663-670. .
Chen, Y., N. R. Jaegers, K. S. Han, H. Wang, R. P. Young, G. Agarwal, A. S. Lipton, R. S. Assary, N. M. Washton, J. Z. Hu, K. T. Mueller, and V. Murugesan. 2020. “Probing Conformational Evolution and Associated Dynamics of Mg(N(SO2CF3)2)2·Dimethoxyethane Adduct Using Solid-State 19F and 1H NMR.” Journal of Physical Chemistry C 124 (9): 4999-5008. .
Schneemann, A., L. F. Wan, A. S. Lipton, Y. S. Liu, J. L. Snider, A. A. Baker, J. D. Sugar, C. D. Spataru, J. Guo, T. S. Autrey, M. Jørgensen, T. R. Jensen, B. C. Wood, M. D. Allendorf, and V. Stavila. 2020. “Nanoconfinement of Molecular Magnesium Borohydride Captured in a Bipyridine-Functionalized Metal-Organic Framework.” ACS Nano 14 (8): 10294-10304. .
White, J. L., N. A. Strange, J. D. Sugar, J. L. Snider, A. Schneemann, A. S. Lipton, M. F. Toney, M. D. Allendorf, and V. Stavila. 2020. “Melting of Magnesium Borohydride under High Hydrogen Pressure: Thermodynamic Stability and Effects of Nanoconfinement.” Chemistry of Materials 32 (13): 5604-5615. .
2019
Graham, T. R., J. Z. Hu, X. Zhang, M. Dembowski, N. R. Jaegers, C. Wan, M. Bowden, A. S. Lipton, A. R. Felmy, S. B. Clark, K. M. Rosso, and C. I. Pearce. 2019. “Unraveling Gibbsite Transformation Pathways into LiAl-LDH in Concentrated Lithium Hydroxide.” Inorganic Chemistry 58 (18): 12385-12394. .
Grube, E., A. S. Lipton, and U. G. Nielsen. 2019. “Identification of Hydrogen Species in Alunite-Type Minerals by Multi-Nuclear Solid-State NMR Spectroscopy.” Physics and Chemistry of Minerals 46 (3): 299-309. .
Han, B., B. Key, A. S. Lipton, J. T. Vaughey, B. Hughes, J. Trevey, and F. Dogan. 2019. “Influence of Coating Protocols on Alumina-Coated Cathode Material: Atomic Layer Deposition Versus Wet-Chemical Coating.” Journal of the Electrochemical Society 166 (15): A3679-A3684. .
Nienhuis, E. T., M. Saleh, J. Marcial, K. Kriegsman, J. Lonergan, A. S. Lipton, X. Guo, and J. S. McCloy. 2019. “Structural Characterization of ZnSO4-K2SO4-NaC Glasses.” Journal of Non-Crystalline Solids 524. .
Stavila, V., M. E. Foster, J. W. Brown, R. W. Davis, J. Edgington, A. I. Benin, R. A. Zarkesh, R. Parthasarathi, D. W. Hoyt, E. D. Walter, A. Andersen, N. M. Washton, A. S. Lipton, and M. D. Allendorf. 2019. “IRMOF-74(n)-Mg: A Novel Catalyst Series for Hydrogen Activation and Hydrogenolysis of C-O Bonds.” Chemical Science 10 (42): 9880-9892. .
Xu, J., Y. M. Liu, A. S. Lipton, J. Ye, G. L. Hoatson, P. J. Milner, T. M. McDonald, R. L. Siegelman, A. C. Forse, B. Smit, J. R. Long, and J. A. Reimer. 2019. “Amine Dynamics in Diamine-Appended Mg2(dobpdc) Metal-Organic Frameworks.” Journal of Physical Chemistry Letters 10 (22): 7044-7049. .
2018
Wustrow, A., B. Key, P. J. Phillips, N. Sa, A. S. Lipton, R. F. Klie, J. T. Vaughey, and K. R. Poeppelmeier. 2018. “Synthesis and Characterization of MgCr2S4 Thiospinel as a Potential Magnesium Cathode.” Inorganic Chemistry 57 (14): 8634-8638. .
2017
Vogelsberg, C. S., F. J. Uribe-Romo, A. S. Lipton, S. Yang, K. N. Hou, S. Brown, and M. A. Garcia-Garibay. 2017. “Ultrafast Rotation in an Amphidynamic Crystalline Metal Organic Framework.” Proceedings of the National Academy of Sciences of the United States of America 114 (52): 13613-13618. .
Weaver, J., C. Z. Soderquist, N. M. Washton, A. S. Lipton, P. L. Gassman, W. W. Lukens, A. A. Kruger, N. A. Wall, and J. S. McCloy. 2017. “Chemical Trends in Solid Alkali Pertechnetates.” Inorganic Chemistry 56 (5): 2533-2544. .
Xu, J., E. S. M. Blaakmeer, A. S. Lipton, T. M. McDonald, Y. M. Liu, B. Smit, J. R. Long, A. P. M. Kentgens, and J. A. Reimer. 2017. “Uncovering the Local Magnesium Environment in the Metal-Organic Framework Mg2(dobpdc) Using 25Mg NMR Spectroscopy.” Journal of Physical Chemistry C 121 (36): 19938-19945. .
2015
Dithmer, L., A. S. Lipton, K. Reitzel, T. E. Warner, D. Lundberg, and U. G. Nielsen. 2015. “Characterization of Phosphate Sequestration by a Lanthanum Modified Bentonite Clay: A Solid-State NMR, EXAFS, and PXRD Study.” Environmental Science and Technology 49 (7): 4559-4566. .
Pushparaj, S. S. C., C. Forano, V. Prevot, A. S. Lipton, G. J. Rees, J. V. Hanna, and U. G. Nielsen. 2015. “How the Method of Synthesis Governs the Local and Global Structure of Zinc Aluminum Layered Double Hydroxides.” Journal of Physical Chemistry C 119 (49): 27695-27707. .
Vugmeyster, L., D. Ostrovsky, T. Villafranca, J. Sharp, W. Xu, A. S. Lipton, G. L. Hoatson, and R. L. Vold. 2015. “Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR.” Journal of Physical Chemistry B 119 (47): 14892-14904. .
2014
Petersen, L. B., A. S. Lipton, V. Zorin, and U. G. Nielsen. 2014. “Local Environment and Composition of Magnesium Gallium Layered Double Hydroxides Determined from Solid-State 1H and 71Ga NMR Spectroscopy.” Journal of Solid State Chemistry 219: 242-246. .
2013
Han, Y., G. Hou, C. L. Suiter, J. Ahn, I. J. L. Byeon, A. S. Lipton, S. Burton, I. Hung, P. L. Gorkov, Z. Gan, W. Brey, D. Rice, A. M. Gronenborn, and T. Polenova. 2013. “Magic Angle Spinning NMR Reveals Sequence-Dependent Structural Plasticity, Dynamics, and the Spacer Peptide 1 Conformation in HIV-1 Capsid Protein Assemblies.” Journal of the American Chemical Society 135 (47): 17793-17803. .
Kwak, J. H., J. H. Lee, S. D. Burton, A. S. Lipton, C. H. F. Peden, and J. Szanyi. 2013. “A Common Intermediate for N2 Formation in Enzymes and Zeolites: Side-on Cu-Nitrosyl Complexes.” Angewandte Chemie - International Edition 52 (38): 9985-9989. .
McCloy, J. S., B. J. Riley, A. S. Lipton, C. F. Windisch Jr, N. M. Washton, M. J. Olszta, and C. P. Rodriguez. 2013. “Structure and Chemistry in Halide Lead-Tellurite Glasses.” Journal of Physical Chemistry C 117 (7): 3456-3466. .
Vugmeyster, L., D. Ostrovsky, and A. S. Lipton. 2013. “Origin of Abrupt Rise in Deuteron NMR Longitudinal Relaxation Times of Protein Methyl Groups Below 90 K.” Journal of Physical Chemistry B 117 (20): 6129-6137. .
2011
Comellas, G., L. R. Lemkau, A. J. Nieuwkoop, K. D. Kloepper, D. T. Ladror, R. Ebisu, W. S. Woods, A. S. Lipton, J. M. George, and C. M. Rienstra. 2011. “Structured Regions of Α-Synuclein Fibrils Include the Early-Onset Parkinson's Disease Mutation Sites.” Journal of Molecular Biology 411 (4): 881-895. .
Koch, R., A. S. Lipton, S. Filipek, and V. Renugopalakrishnan. 2011. “Arginine Interactions with Anatase TiO2 (100) Surface and the Perturbation of 49Ti NMR Chemical Shifts - a DFT Investigation: Relevance to Renu-Seeram Bio Solar Cell.” Journal of Molecular Modeling 17 (6): 1467-1472. .
2010
Davis, M. C., W. J. Brouwer, A. S. Lipton, Z. Gan, and K. T. Mueller. 2010. “Characterization of Cation Environments in Polycrystalline Forsterite by 25Mg MAS, MGMAS, and QCPMG NMR.” American Mineralogist 95 (11-12): 1601-1607. .
Ellis, P. D., J. A. Sears, P. Yang, M. Dupuis, T. T. Boron, V. L. Pecoraro, T. A. Stich, R. D. Britt, and A. S. Lipton. 2010. “Solid-State 55Mn NMR Spectroscopy of Bis(µ-oxo) Dimanganese(IV) [Mn2O2(salpn)2], a Model for the Oxygen Evolving Complex in Photosystem II.” Journal of the American Chemical Society 132 (47): 16727-16729. .
Sperling, L. J., A. J. Nieuwkoop, A. S. Lipton, D. A. Berthold, and C. M. Rienstra. 2010. “High Resolution NMR Spectroscopy of Nanocrystalline Proteins at Ultra-High Magnetic Field.” Journal of Biomolecular NMR 46 (2): 149-155. .
Vugmeyster, L., D. Ostrovsky, J. J. Ford, and A. S. Lipton. 2010. “Freezing of Dynamics of a Methyl Group in a Protein Hydrophobic Core at Cryogenic Temperatures by Deuteron NMR Spectroscopy.” Journal of the American Chemical Society 132 (12): 4038-4039. .
Vugmeyster, L., D. Ostrovsky, M. Moses, J. J. Ford, A. S. Lipton, G. L. Hoatson, and R. L. Vold. 2010. “Comparative Dynamics of Leucine Methyl Groups in FMOC-Leucine and in a Protein Hydrophobic Core Probed by Solid-State Deuteron Nuclear Magnetic Resonance over 7-324 K Temperature Range.” Journal of Physical Chemistry B 114 (48): 15799-15807. .
2009
Davis, M. C., W. J. Brouwer, D. J. Wesolowski, L. M. Anovitz, A. S. Lipton, and K. T. Mueller. 2009. “Magnesium Silicate Dissolution Investigated by 29Si MAS, 1H-29Si CPMAS, 25Mg QCPMG, and 1H-25Mg CP QCPMG NMR.” Physical Chemistry Chemical Physics 11 (32): 7013-7021. .
Lipton, A. S., R. W. Heck, W. A. De Jong, A. R. Gao, X. Wu, A. Roehrich, G. S. Harbison, and P. D. Ellis. 2009. “Low Temperature 65Cu NMR Spectroscopy of the Cu+ Site in Azurin.” Journal of the American Chemical Society 131 (39): 13992-13999. .
Vugmeyster, L., D. Ostrovsky, J. J. Ford, S. D. Burton, A. S. Lipton, G. L. Hoatson, and R. L. Vold. 2009. “Probing the Dynamics of a Protein Hydrophobic Core by Deuteron Solid-State Nuclear Magnetic Resonance Spectroscopy.” Journal of the American Chemical Society 131 (38): 13651-13658. .
2008
Bouchard, L. S., A. O. Sushkov, D. Budker, J. J. Ford, and A. S. Lipton. 2008. “Nuclear-Spin Relaxation of Pb207 in Ferroelectric Powders.” Physical Review A - Atomic, Molecular, and Optical Physics 77 (2). .
Bowmaker, G. A., J. V. Hanna, F. E. Hahn, A. S. Lipton, C. E. Oldham, B. W. Skelton, M. E. Smith, and A. H. White. 2008. “Structural and Spectroscopic Studies of Some Copper(I) Halide Tert-Butyl Isocyanide Adducts.” Dalton Transactions (13): 1710-1720. .
Cho, H., W. J. Shaw, V. Parvanov, G. K. Schenter, A. Karkamkar, N. J. Hess, C. Mundy, S. Kathmann, J. Sears, A. S. Lipton, P. D. Ellis, and S. Thomas Autrey. 2008. “Molecular Structure and Dynamics in the Low Temperature (Orthorhombic) Phase of NH3BH3.” Journal of Physical Chemistry A 112 (18): 4277-4283. .
Lipton, A. S., R. W. Heck, M. Hernick, C. A. Fierke, and P. D. Ellis. 2008. “Residue Ionization in Lpxc Directly Observed by 67Zn NMR Spectroscopy.” Journal of the American Chemical Society 130 (38): 12671-12679. .
Lipton, A. S., R. W. Heck, S. Primak, D. R. McNeill, D. M. Wilson Iii, and P. D. Ellis. 2008. “Characterization of Mg2+ Binding to the DNA Repair Protein Apurinic/Apyrimidic Endonuclease 1 Via Solid-State 25Mg NMR Spectroscopy.” Journal of the American Chemical Society 130 (29): 9332-9341. .
Lipton, A. S., R. W. Heck, G. R. Staeheli, M. Valiev, W. A. De Jong, and P. D. Ellis. 2008. “A QM/MM Approach to Interpreting 67Zn Solid-State NMR Data in Zinc Proteins.” Journal of the American Chemical Society 130 (19): 6224-6230. .
Lipton, A. S., M. M. Morlok, G. Parkin, and P. D. Ellis. 2008. “67Zn Solid-State NMR Spectroscopy of {[TpBut,Me] Zn(OH2)}[HOB(C6F5)3]. The Importance of the Anion [HOB(C6F5)3].” Inorganic Chemistry 47 (12): 5184-5189. .
2007
Lipton, A. S., and P. D. Ellis. 2007. “Modeling the Metal Center of Cys4 Zinc Proteins.” Journal of the American Chemical Society 129 (29): 9192-9200. .
2006
Bowers, G. M., A. S. Lipton, and K. T. Mueller. 2006. “High-Field QCPMG NMR of Strontium Nuclei in Natural Minerals.” Solid State Nuclear Magnetic Resonance 29 (1-3): 95-103. .
Ellis, P. D., and A. S. Lipton. 2006. Low-Temperature Solid-State NMR Spectroscopy. A Strategy for the Direct Observation of Quadrupolar Nuclides of Biological Interest. In Annual Reports on NMR Spectroscopy.
Larsen, F. H., I. Farnan, and A. S. Lipton. 2006. “Separation of 47Ti and 49Ti Solid-State NMR Lineshapes by Static QCPMG Experiments at Multiple Fields.” Journal of Magnetic Resonance 178 (2): 228-236. .
2004
Lipton, A. S., R. W. Heck, and P. D. Ellis. 2004. “Zinc Solid-State NMR Spectroscopy of Human Carbonic Anhydrase: Implications for the Enzymatic Mechanism.” Journal of the American Chemical Society 126 (14): 4735-4739. .
Lipton, A. S., R. W. Heck, J. A. Sears, and P. D. Ellis. 2004. “Low Temperature Solid-State NMR Experiments of Half-Integer Quadrupolar Nuclides: Caveats and Data Analysis.” Journal of Magnetic Resonance 168 (1): 66-74. .
2003
Lipton, A. S., C. Bergquist, G. Parkin, and P. D. Ellis. 2003. “Solid-State 67Zn NMR Spectroscopic Studies and Ab Initio Molecular Orbital Calculations on a Synthetic Analogue of Carbonic Anhydrase.” Journal of the American Chemical Society 125 (13): 3768-3772. .
2002
Lipton, A. S., M. D. Smith, R. D. Adams, and P. D. Ellis. 2002. “Zn Solid-State and Single-Crystal NMR Spectroscopy and X-Ray Crystal Structure of Zinc Formate Dihydrate.” Journal of the American Chemical Society 124 (3): 410-414. .
Lipton, A. S., T. A. Wright, M. K. Bowman, D. L. Reger, and P. D. Ellis. 2002. “Solid-State 67Zn NMR Spectroscopy in Bioinorganic Chemistry. Spectra of Four- and Six-Coordinate Zinc Pyrazolylborate Complexes Obtained by Management of Proton Relaxation Rates with a Paramagnetic Dopant.” Journal of the American Chemical Society 124 (20): 5850-5860. .
2001
Bowmaker, G. A., J. V. Hanna, C. E. F. Rickard, and A. S. Lipton. 2001. “Crystal Structures and Vibrational and Solid-State (CPMAS) NMR Spectroscopy of Some Bis(Triphenylphosphine)Silver(I) Sulfate, Selenate and Phosphate Systems.” Journal of the Chemical Society, Dalton Transactions (1): 20-28. .
Lipton, A. S., G. W. Buchko, J. A. Sears, M. A. Kennedy, and P. D. Ellis. 2001. “67Zn Solid-State NMR Spectroscopy of the Minimal DNA Binding Domain of Human Nucleotide Excision Repair Protein XPA.” Journal of the American Chemical Society 123 (5): 992-993. .
Lipton, A. S., J. A. Sears, and P. D. Ellis. 2001. “A General Strategy for the NMR Observation of Half-Integer Quadrupolar Nuclei in Dilute Environments.” Journal of Magnetic Resonance 151 (1): 48-59. .
1999
Jacobs, D. M., A. S. Lipton, N. G. Isern, G. W. Daughdrill, D. F. Lowry, X. Gomes, and M. S. Wold. 1999. “Human Replication Protein A: Global Fold of the N-Terminal RPA-70 Domain Reveals a Basic Cleft and Flexible C-Terminal Linker.” Journal of Biomolecular NMR 14 (4): 321-331. .
Larsen, F. H., A. S. Lipton, H. J. Jakobsen, N. C. Nielsen, and P. D. Ellis. 1999. “67Zn QCPMG Solid-State NMR Studies of Zinc Complexes as Models for Metalloproteins.” Journal of the American Chemical Society 121 (15): 3783-3784. .
1996
Lipton, A. S., S. S. Mason, S. M. Myers, D. L. Reger, and P. D. Ellis. 1996. “113Cd Shielding Tensors of Monomeric Cadmium Compounds Containing Nitrogen Donor Atoms. 3. CP/MAS Studies on Five-Coordinate Cadmium Complexes Having N3X2 (X = H, N, O, and S) Donor Atoms.” Inorganic Chemistry 35 (24): 7111-7117. .
McAteer, K., A. S. Lipton, M. A. Kennedy, and P. D. Ellis. 1996. “A Multiphase 113Cd NMR Investigation of Metalloporphyrin Reorientation in Cadmium-Substituted Myoglobin.” Solid State Nuclear Magnetic Resonance 7 (3): 229-238. .
1995
Reger, D. L., S. M. Myers, S. S. Mason, D. J. Darensbourg, M. W. Holtcamp, J. H. Reibenspies, A. S. Lipton, and P. D. Ellis. 1995. “113Cd Shielding Tensors of Monomeric Cadmium Compounds Containing Nitrogen Donor Atoms. 2. Syntheses, Crystal Structure, and 113Cd NMR Spectroscopy of the Six-Coordinate Complexes [HB(pz)3]2Cd, [HB(3-Phpz)3]2Cd, and [B(pz)4]Cd[HB(3-Phpz)3] (pz = pyrazolyl).” Journal of the American Chemical Society 117 (44): 10998-11005. .
1994
Lipton, A. S., S. S. Mason, D. L. Reger, and P. D. Ellis. 1994. “113Cd Shielding Tensors of Monomeric Cadmium Compounds Containing Nitrogen Donor Atoms. 1. CP/MAS Studies on Cadmium Poly(Pyrazolyl)Borate Complexes Having N4 and N6 coordination Environments.” Journal of the American Chemical Society 116 (22): 10182-10187. .
1993
Ellis, P. D., J. D. Odom, A. S. Lipton, and J. M. Gulick. 1993. “Comments Concerning the Computation of 113Cd Chemical Shifts.” Journal of the American Chemical Society 115 (2): 755-759. .